.. soapy documentation master file, created by
   sphinx-quickstart on Sun Dec  3 22:27:33 2023.
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SOAPy - Spatial Omics Analysis in Python
====================================================

|PyPI| |PyPIDownloads|

.. |PyPI| image:: https://img.shields.io/pypi/v/SOAPy_st?logo=PyPI
   :target: https://pypi.org/project/SOAPy_st
.. |PyPIDownloads| image:: https://pepy.tech/badge/SOAPy_st
   :target: https://pepy.tech/project/SOAPy_st



**SOAPy** is an integrated toolkit that focuses on addressing spatial heterogeneity. SOAPy contains four data
preprocessing modules (“Data Import”, “spatial network”, and “Spatial Domain”), three modules for analyzing spatial
expression patterns of genes (“Spatial Variation”, “Spatial Tendency”, and “Spatiotemporal Pattern”), two modules
for analyzing the spatial architecture of cells (“Spatial Proximity”, “Spatial Composition”), and two module for
analyzing Spatial Communication.


.. image:: ./_static/Overview.png
    :alt: Title figure
    :width: 700px
    :align: center

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   Installation
   Tutorials/index
   Api/index
   Release_notes
   References


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`